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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bcs BTN Avidin-related protein 4/5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4bcs BTNAvidin-related protein 4/5 / 1.047
1y52 BTNAvidin-related protein 4/5 / 1.004
2fhl BNIAvidin-related protein 4/5 / 0.994
2fhn BNIAvidin-related protein 4/5 / 0.986
2uyw BTNAvd protein / 0.944
2c4i BTNAvidin / 0.920
3vgw NVZAvidin / 0.904
3vhi VHIAvidin / 0.892
2rtd BTNStreptavidin / 0.875
2rte BTNStreptavidin / 0.875
3ry2 BTNStreptavidin / 0.872
2izh BTNStreptavidin / 0.870
2izf BTNStreptavidin / 0.869
2y3f BTNStreptavidin / 0.869
2rtf BTNStreptavidin / 0.865
4dne DTBStreptavidin / 0.865
1swe BTNStreptavidin / 0.861
4gda BTNStreptavidin / 0.857
2izg BTNStreptavidin / 0.855
3wyq BTNStreptavidin / 0.854
2rtg BTNStreptavidin / 0.851
1i9h BNIStreptavidin / 0.850
2avi BTNAvidin / 0.843
2uz2 BTNAvd protein / 0.843
1lcw SHMStreptavidin / 0.842
3ew2 BTNHypothetical conserved protein / 0.841
3wyp BSOStreptavidin / 0.841
4gd9 BTNStreptavidin / 0.839
2jgs BTNAvidin / 0.835
1mk5 BTNStreptavidin / 0.829
2izi BTNStreptavidin / 0.829
1nqm BTNStreptavidin / 0.828
1n9m BTNStreptavidin / 0.826
2zsc BTNTamavidin2 / 0.826
1n43 BTNStreptavidin / 0.820
4bj8 BTNAvidin / 0.815
4yvb BTNStreptavidin / 0.810
1swn BTNStreptavidin / 0.807
2izj BTNStreptavidin / 0.805
1luq BTNStreptavidin / 0.799
3wzn BTNStreptavidin / 0.798
4bx7 B4FStreptavidin / 0.794
4z28 BTNHoefavidin / 0.790
1swt BTNStreptavidin / 0.787
2izl IMIStreptavidin / 0.787
3t2w BTNAvidin/streptavidin / 0.780
1df8 BTNStreptavidin / 0.774
1stp BTNStreptavidin / 0.769
1ndj BTNStreptavidin / 0.766
1mep BTNStreptavidin / 0.765
1swg BTNStreptavidin / 0.762
4ggz BTNBll1558 protein / 0.759
2rtp IMIStreptavidin / 0.750
1ij8 BNIAvidin / 0.747
1rxh BNIStreptavidin / 0.740
2rto IMIStreptavidin / 0.732
1rxj BNIStreptavidin / 0.730
1lcz BH7Streptavidin / 0.727
1swp BTQStreptavidin / 0.722
3rdq DTBStreptavidin / 0.722
2rtm IMIStreptavidin / 0.719
2rtq IMIStreptavidin / 0.702
1ldq SHMAvidin / 0.701
2rtr IMIStreptavidin / 0.699
2rtn IMIStreptavidin / 0.691
3rdo BTNStreptavidin / 0.681
1swd BTNStreptavidin / 0.677
3eqm ASDAromatase 1.14.14.14 0.663
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 0.661
2rtl IMIStreptavidin / 0.653
3ijd C2FMethylenetetrahydrofolate reductase / 0.650