2.700 Å
X-ray
2002-04-09
Name: | Avidin |
---|---|
ID: | AVID_CHICK |
AC: | P02701 |
Organism: | Gallus gallus |
Reign: | Eukaryota |
TaxID: | 9031 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 33.877 |
---|---|
Number of residues: | 21 |
Including | |
Standard Amino Acids: | 21 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.817 | 253.125 |
% Hydrophobic | % Polar |
---|---|
66.67 | 33.33 |
According to VolSite |
HET Code: | SHM |
---|---|
Formula: | C11H17N2O3S |
Molecular weight: | 257.329 g/mol |
DrugBank ID: | DB03112 |
Buried Surface Area: | 45.72 % |
Polar Surface area: | 106.55 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-1.773 | 29.3367 | 25.0629 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O17 | OH | TYR- 33 | 2.86 | 157.86 | H-Bond (Protein Donor) |
C10 | CZ2 | TRP- 70 | 3.4 | 0 | Hydrophobic |
S7 | CZ2 | TRP- 70 | 3.52 | 0 | Hydrophobic |
C10 | CZ | PHE- 72 | 4.45 | 0 | Hydrophobic |
C12 | CE2 | PHE- 72 | 4 | 0 | Hydrophobic |
S7 | CG2 | THR- 77 | 3.72 | 0 | Hydrophobic |
C8 | CE2 | TRP- 97 | 3.42 | 0 | Hydrophobic |
C11 | CD2 | LEU- 99 | 3.93 | 0 | Hydrophobic |
C6 | CD2 | LEU- 99 | 4.31 | 0 | Hydrophobic |
N5 | OD1 | ASN- 118 | 3.13 | 145.15 | H-Bond (Ligand Donor) |