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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bca FAD Alkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4bca FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 1.511
4bby FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 1.446
4bc7 FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 1.361
2uuv FADAlkyldihydroxyacetonephosphate synthase 2.5.1.26 0.996
2gqt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.966
1hsk FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.919
3pm9 FADPutative oxidoreductase / 0.917
4jay FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.914
3tx1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.894
4jb1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.889
3i99 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.835
1f0x FADD-lactate dehydrogenase 1.1.1.28 0.824
4fdn FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.823
4fdp FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.797
1wyg FADXanthine dehydrogenase/oxidase / 0.783
4aut FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.776
4ysw FADXanthine dehydrogenase/oxidase / 0.749
4feh FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.734
4pyt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.729
1mbt FADUDP-N-acetylenolpyruvoylglucosamine reductase 1.3.1.98 0.701
4f4q FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.699
1qlt FADVanillyl-alcohol oxidase 1.1.3.38 0.694
4zoh FADPutative oxidoreductase FAD-binding subunit / 0.691
3aty FMNProstaglandin F2a synthase / 0.689
1h51 FMNPentaerythritol tetranitrate reductase / 0.687
1ffu FADCarbon monoxide dehydrogenase medium chain / 0.686
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.680
2abb FMNPentaerythritol tetranitrate reductase / 0.673
1h50 FMNPentaerythritol tetranitrate reductase / 0.672
1vyr FMNPentaerythritol tetranitrate reductase / 0.672
3f03 FMNPentaerythritol tetranitrate reductase / 0.669
3p84 FMNPentaerythritol tetranitrate reductase / 0.669
3p8i FMNPentaerythritol tetranitrate reductase / 0.669
3p8j FMNPentaerythritol tetranitrate reductase / 0.669
3p62 FMNPentaerythritol tetranitrate reductase / 0.668
1h63 FMNPentaerythritol tetranitrate reductase / 0.667
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.665
4tmb FMNOld yellow enzyme / 0.663
2fmo FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.662
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.661
3p74 FMNPentaerythritol tetranitrate reductase / 0.661
3p67 FMNPentaerythritol tetranitrate reductase / 0.660
2q3r FMN12-oxophytodienoate reductase 1 1.3.1.42 0.659
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.659
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.658
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.657
1gwj FMNMorphinone reductase / 0.656
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.653
1owo FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.652