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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4b9q ATP Chaperone protein DnaK

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4b9q ATPChaperone protein DnaK / 1.140
1t44 ATPActin, alpha skeletal muscle / 0.898
4k41 ATPActin, alpha skeletal muscle / 0.882
4pkg ATPActin, alpha skeletal muscle / 0.867
2q36 ATPActin, alpha skeletal muscle / 0.865
1nlv ATPMajor actin / 0.851
1s22 ATPActin, alpha skeletal muscle / 0.850
2v51 ATPActin, alpha skeletal muscle / 0.846
3chw ATPMajor actin / 0.843
1c0f ATPMajor actin / 0.831
3m6g ATPActin, alpha skeletal muscle / 0.822
4pl8 ATPActin, alpha skeletal muscle / 0.817
3d2e ATPHeat shock protein homolog SSE1 / 0.812
4cbx ATPActin-2 / 0.811
3daw ATPActin, alpha skeletal muscle / 0.798
3tu5 ATPActin, alpha skeletal muscle / 0.790
1mdu ATPActin, alpha skeletal muscle / 0.784
4a62 ANPPlasmid segregation protein ParM / 0.783
2d0o ADPDiol dehydratase-reactivating factor alpha subunit / 0.781
1ijj ATPActin, alpha skeletal muscle / 0.774
2q97 ATPActin, alpha skeletal muscle / 0.766
5ce3 ATPActin / 0.763
3fe1 ADPHeat shock 70 kDa protein 6 / 0.758
1rgi ATPActin, alpha skeletal muscle / 0.752
3mn9 ATPActin-5C / 0.750
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.749
2p9k ATPActin-related protein 2 / 0.748
4pkh ADPActin, alpha skeletal muscle / 0.745
2qwl ADPHeat shock cognate 71 kDa protein / 0.739
2e2q ADPATP-dependent hexokinase / 0.737
1ngj ANPHeat shock cognate 71 kDa protein / 0.734
3mn7 ATPActin-5C / 0.734
1ngb ADPHeat shock cognate 71 kDa protein / 0.730
4eht ADP2-hydroxyisocaproyl-CoA dehydratase activator / 0.729
1ngd ADPHeat shock cognate 71 kDa protein / 0.722
2qwn ADPHeat shock cognate 71 kDa protein / 0.722
3a5m ATPMajor actin / 0.719
1nge ATPHeat shock cognate 71 kDa protein / 0.715
3m1f ATPActin, alpha skeletal muscle / 0.712
5f1x ATP78 kDa glucose-regulated protein / 0.711
3ldo ANP78 kDa glucose-regulated protein / 0.705
1ats ADPHeat shock cognate 71 kDa protein / 0.704
3ldl ATP78 kDa glucose-regulated protein / 0.703
4ci6 ATPActin / 0.700
4m63 ATPActin-5C / 0.699
1ngc ADPHeat shock cognate 71 kDa protein / 0.694
2qwq ADPHeat shock cognate 71 kDa protein / 0.693
3hsc ADPHeat shock cognate 71 kDa protein / 0.693
1ngi ANPHeat shock cognate 71 kDa protein / 0.689
1yxq ATPActin, alpha skeletal muscle / 0.682
2qwr ANPHeat shock cognate 71 kDa protein / 0.682
3w3d ATPActin, gamma-enteric smooth muscle / 0.679
3wt0 ATPCell division protein FtsA / 0.673
3h1q ATPEthanolamine utilization protein EutJ / 0.671
2oan ATPActin, cytoplasmic 1 / 0.669
4brd ANPEctonucleoside triphosphate diphosphohydrolase I / 0.664
3ule ATPActin-related protein 2 / 0.663
1atr ADPHeat shock cognate 71 kDa protein / 0.658
1nmd ATPMajor actin / 0.657
4a61 ANPPlasmid segregation protein ParM / 0.657
1ngh ATPHeat shock cognate 71 kDa protein / 0.655
2zgz GNPPlasmid segregation protein ParM / 0.654
4br0 AU1Ectonucleoside triphosphate diphosphohydrolase 2 / 0.651
3dzk NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.650
4k43 ADPActin, alpha skeletal muscle / 0.650