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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4az2 9MU Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4az2 9MUProthrombin 3.4.21.5 0.983
4ayv 9MQProthrombin 3.4.21.5 0.868
4ayy 9MXProthrombin 3.4.21.5 0.841
4ax9 N5NProthrombin 3.4.21.5 0.835
2cf8 ESHProthrombin 3.4.21.5 0.780
1ypj UIBProthrombin 3.4.21.5 0.775
4bam MM9Prothrombin 3.4.21.5 0.766
1ypg UIRProthrombin 3.4.21.5 0.755
1ype UIPProthrombin 3.4.21.5 0.754
2zda 32UProthrombin 3.4.21.5 0.751
2cn0 F25Prothrombin 3.4.21.5 0.750
4bao MVFProthrombin 3.4.21.5 0.744
1lpk CBBCoagulation factor X 3.4.21.6 0.738
1riw OSCProthrombin 3.4.21.5 0.738
2zhe 13UProthrombin 3.4.21.5 0.738
1c4v IH2Prothrombin 3.4.21.5 0.733
1d4p BPPProthrombin 3.4.21.5 0.733
3v0x ANHCationic trypsin 3.4.21.4 0.731
1o0d 163Prothrombin 3.4.21.5 0.730
1k21 IGNProthrombin 3.4.21.5 0.727
1ypk CCRProthrombin 3.4.21.5 0.727
3utu 1TSProthrombin 3.4.21.5 0.727
2ziq 26UProthrombin 3.4.21.5 0.725
1c5n ESIProthrombin 3.4.21.5 0.723
2zhf 49UProthrombin 3.4.21.5 0.723
1ypm RA4Prothrombin 3.4.21.5 0.722
4ban M6SProthrombin 3.4.21.5 0.717
2zgx 29UProthrombin 3.4.21.5 0.715
2zi2 24UProthrombin 3.4.21.5 0.711
4baq M4ZProthrombin 3.4.21.5 0.711
1c1u BAIProthrombin 3.4.21.5 0.710
3plp BBACationic trypsin 3.4.21.4 0.709
1o5g CR9Prothrombin 3.4.21.5 0.705
2zhw 12UProthrombin 3.4.21.5 0.705
1nzq 162Prothrombin 3.4.21.5 0.703
2znk 31UProthrombin 3.4.21.5 0.700
2anm CDOProthrombin 3.4.21.5 0.698
2v3o I26Prothrombin 3.4.21.5 0.698
2zg0 50UProthrombin 3.4.21.5 0.697
4bak M67Prothrombin 3.4.21.5 0.697
2zfr 46UProthrombin 3.4.21.5 0.693
2bok 784Coagulation factor X 3.4.21.6 0.688
1k22 MELProthrombin 3.4.21.5 0.683
2v3h I25Prothrombin 3.4.21.5 0.683
1c4u IH1Prothrombin 3.4.21.5 0.682
7kme ACE_0BN_CHG_PRRProthrombin 3.4.21.5 0.681
1f92 UKPUrokinase-type plasminogen activator 3.4.21.73 0.679
3biv 11UProthrombin 3.4.21.5 0.679
3biu 10UProthrombin 3.4.21.5 0.672
2pks G44Prothrombin 3.4.21.5 0.669
1ae8 AZLProthrombin 3.4.21.5 0.667
1o2g 696Prothrombin 3.4.21.5 0.667
2gde SN3Prothrombin 3.4.21.5 0.667
1wtg 3BPCoagulation factor VII 3.4.21.21 0.666
1vzq SHYProthrombin 3.4.21.5 0.665
1oyt FSNProthrombin 3.4.21.5 0.662
1wqv PSMCoagulation factor VII 3.4.21.21 0.661
2a2x NA9Prothrombin 3.4.21.5 0.661
3hat GLY_VAL_ARG_RNGProthrombin 3.4.21.5 0.660
1r35 I58Nitric oxide synthase, inducible 1.14.13.39 0.659
1mue CDDProthrombin 3.4.21.5 0.657
4jpc 1M6Beta-secretase 1 3.4.23.46 0.652
1t4v 14AProthrombin 3.4.21.5 0.651
4djw 0KPBeta-secretase 1 3.4.23.46 0.650