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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ayv 9MQ Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ayv 9MQProthrombin 3.4.21.5 1.073
4az2 9MUProthrombin 3.4.21.5 0.868
4ax9 N5NProthrombin 3.4.21.5 0.864
4ayy 9MXProthrombin 3.4.21.5 0.829
4ban M6SProthrombin 3.4.21.5 0.766
2cf8 ESHProthrombin 3.4.21.5 0.764
4bam MM9Prothrombin 3.4.21.5 0.760
4bao MVFProthrombin 3.4.21.5 0.751
2cn0 F25Prothrombin 3.4.21.5 0.748
1ypj UIBProthrombin 3.4.21.5 0.745
1vzq SHYProthrombin 3.4.21.5 0.741
2zhf 49UProthrombin 3.4.21.5 0.739
1ypg UIRProthrombin 3.4.21.5 0.738
1nzq 162Prothrombin 3.4.21.5 0.736
2v3o I26Prothrombin 3.4.21.5 0.736
2zgx 29UProthrombin 3.4.21.5 0.736
1ypk CCRProthrombin 3.4.21.5 0.731
4e7r 0NWProthrombin 3.4.21.5 0.725
4bak M67Prothrombin 3.4.21.5 0.723
1c4v IH2Prothrombin 3.4.21.5 0.718
2zi2 24UProthrombin 3.4.21.5 0.716
2ziq 26UProthrombin 3.4.21.5 0.713
1o0d 163Prothrombin 3.4.21.5 0.710
1ghv 120Prothrombin 3.4.21.5 0.708
2zfr 46UProthrombin 3.4.21.5 0.708
1gj5 130Prothrombin 3.4.21.5 0.707
2anm CDOProthrombin 3.4.21.5 0.707
3utu 1TSProthrombin 3.4.21.5 0.704
4baq M4ZProthrombin 3.4.21.5 0.704
7kme ACE_0BN_CHG_PRRProthrombin 3.4.21.5 0.704
1c5n ESIProthrombin 3.4.21.5 0.703
1c4u IH1Prothrombin 3.4.21.5 0.702
1riw OSCProthrombin 3.4.21.5 0.701
3plp BBACationic trypsin 3.4.21.4 0.698
1kts C24Prothrombin 3.4.21.5 0.697
2zfq 45UProthrombin 3.4.21.5 0.691
3hat GLY_VAL_ARG_RNGProthrombin 3.4.21.5 0.690
1k21 IGNProthrombin 3.4.21.5 0.680
2bdy UNBProthrombin 3.4.21.5 0.679
1wqv PSMCoagulation factor VII 3.4.21.21 0.678
1ae8 AZLProthrombin 3.4.21.5 0.676
3v0x ANHCationic trypsin 3.4.21.4 0.675
4bah MELProthrombin 3.4.21.5 0.674
2zda 32UProthrombin 3.4.21.5 0.673
2bok 784Coagulation factor X 3.4.21.6 0.671
1mue CDDProthrombin 3.4.21.5 0.670
1f92 UKPUrokinase-type plasminogen activator 3.4.21.73 0.669
3biv 11UProthrombin 3.4.21.5 0.667
2r2m I50Prothrombin 3.4.21.5 0.666
2zhq 27UProthrombin 3.4.21.5 0.665
1ny2 ARG_PRO_PRO_GLYProthrombin 3.4.21.5 0.663
1xm1 GAHProthrombin 3.4.21.5 0.662
1sb1 165Prothrombin 3.4.21.5 0.661
2znk 31UProthrombin 3.4.21.5 0.658
2pks G44Prothrombin 3.4.21.5 0.657
3biu 10UProthrombin 3.4.21.5 0.654
1k22 MELProthrombin 3.4.21.5 0.653
1ype UIPProthrombin 3.4.21.5 0.652
1oyt FSNProthrombin 3.4.21.5 0.651
1z71 L17Prothrombin 3.4.21.5 0.650