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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4aw5 30K Ephrin type-B receptor 4 2.7.10.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4aw5 30KEphrin type-B receptor 4 2.7.10.1 0.958
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
2bfy H1NAurora kinase B-A 2.7.11.1 0.685
2x2k X2KProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.670
4fkt 48KCyclin-dependent kinase 2 2.7.11.22 0.661
4fkv 61KCyclin-dependent kinase 2 2.7.11.22 0.660
1q41 IXMGlycogen synthase kinase-3 beta 2.7.11.26 0.659
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.656
4fks 46KCyclin-dependent kinase 2 2.7.11.22 0.655
1v0o INRCell division control protein 2 homolog 2.7.11.22 0.652