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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ao4 PLK Beta-transaminase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ao4 PLKBeta-transaminase / 1.308
2ykv IK2Beta-transaminase / 1.003
4aoa IK2Beta-phenylalanine transaminase 2.6.1 0.912
2oat PFMOrnithine aminotransferase, mitochondrial 2.6.1.13 0.773
3tfu PL8Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2.6.1.62 0.773
1mlz PLPAdenosylmethionine-8-amino-7-oxononanoate aminotransferase 2.6.1.62 0.740
4zm3 PLPAminotransferase / 0.736
2pb2 PLPAcetylornithine/succinyldiaminopimelate aminotransferase 2.6.1.11 0.730
1s07 PLPAdenosylmethionine-8-amino-7-oxononanoate aminotransferase 2.6.1.62 0.727
4jey PLPAcetylornithine/succinyldiaminopimelate aminotransferase 2.6.1.11 0.724
4ba5 PXGProbable aminotransferase / 0.708
4d96 5PAD-cysteine desulfhydrase / 0.703
1b9i PXG3-amino-5-hydroxybenzoate synthase 4.2.1.144 0.697
3zrr PXGSerine-pyruvate aminotransferase (AgxT) / 0.694
4jf1 PLPAcetylornithine/succinyldiaminopimelate aminotransferase 2.6.1.11 0.683
3t0i SAHPutative methyltransferase / 0.654
4d9f DCSD-cysteine desulfhydrase / 0.652
3kkz SAMUncharacterized protein / 0.651