1.910 Å
X-ray
2007-03-28
| Name: | Acetylornithine/succinyldiaminopimelate aminotransferase |
|---|---|
| ID: | ARGD_SALTY |
| AC: | P40732 |
| Organism: | Salmonella typhimurium |
| Reign: | Bacteria |
| TaxID: | 99287 |
| EC Number: | 2.6.1.11 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 92 % |
| B | 8 % |
| B-Factor: | 18.516 |
|---|---|
| Number of residues: | 29 |
| Including | |
| Standard Amino Acids: | 26 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 3 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.729 | 1626.750 |
| % Hydrophobic | % Polar |
|---|---|
| 43.78 | 56.22 |
| According to VolSite | |

| HET Code: | PLP |
|---|---|
| Formula: | C8H8NO6P |
| Molecular weight: | 245.126 g/mol |
| DrugBank ID: | DB00114 |
| Buried Surface Area: | 63.2 % |
| Polar Surface area: | 132.42 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 7 |
| H-Bond Donors: | 1 |
| Rings: | 1 |
| Aromatic rings: | 1 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| 66.7024 | 42.2741 | 40.1028 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2P | N | GLY- 108 | 3.11 | 151.54 | H-Bond (Protein Donor) |
| O1P | OG1 | THR- 109 | 2.69 | 152.91 | H-Bond (Protein Donor) |
| O1P | N | THR- 109 | 3.07 | 157.19 | H-Bond (Protein Donor) |
| N1 | ND2 | ASN- 112 | 3.48 | 129.86 | H-Bond (Protein Donor) |
| C5A | CE2 | PHE- 141 | 3.87 | 0 | Hydrophobic |
| C4A | CE2 | PHE- 141 | 3.36 | 0 | Hydrophobic |
| C2A | CG | GLU- 193 | 4.13 | 0 | Hydrophobic |
| N1 | OD1 | ASP- 226 | 3.29 | 122.77 | H-Bond (Ligand Donor) |
| N1 | OD2 | ASP- 226 | 2.74 | 169.88 | H-Bond (Ligand Donor) |
| C2A | CB | VAL- 228 | 4.16 | 0 | Hydrophobic |
| C4 | CG1 | VAL- 228 | 3.67 | 0 | Hydrophobic |
| C2A | CB | GLN- 229 | 4.21 | 0 | Hydrophobic |
| O3 | NE2 | GLN- 229 | 3.36 | 137.65 | H-Bond (Protein Donor) |