Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4a7c E46 Serine/threonine-protein kinase pim-1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4a7c E46Serine/threonine-protein kinase pim-1 2.7.11.1 1.152
4e5i 0N9Polymerase acidic protein / 0.744
3bgq VX2Serine/threonine-protein kinase pim-1 2.7.11.1 0.741
3jy0 LYGSerine/threonine-protein kinase pim-1 2.7.11.1 0.689
2obj VRVSerine/threonine-protein kinase pim-1 2.7.11.1 0.677
3umw 596Serine/threonine-protein kinase pim-1 2.7.11.1 0.676
3bgz VX3Serine/threonine-protein kinase pim-1 2.7.11.1 0.672
3ma3 01ISerine/threonine-protein kinase pim-1 2.7.11.1 0.671
4e5f 0N7Polymerase acidic protein / 0.660
3f7z 34OGlycogen synthase kinase-3 beta 2.7.11.26 0.655
5dgz L20Serine/threonine-protein kinase pim-1 2.7.11.1 0.654