Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zsz OM2 Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zsz OM2Integrase / 0.876
4cfb OM3Integrase / 0.816
3zsx N44Integrase / 0.814
4cig X0PIntegrase / 0.808
3zt3 ZT4Integrase / 0.805
4cjf RVNIntegrase / 0.804
3zcm PX3Integrase / 0.798
4cju JNSIntegrase / 0.798
4cgh LOZIntegrase / 0.796
3zsq O4NIntegrase / 0.794
4cgf UJ6Integrase / 0.794
4cgj NZLIntegrase / 0.791
4cjr FYMIntegrase / 0.791
4cf1 IY7Integrase / 0.786
3zsw ZSWIntegrase / 0.783
4cea ZSWIntegrase / 0.783
4ced 9NSIntegrase / 0.783
3zt2 ZT2Integrase / 0.782
4cgi NZLIntegrase / 0.782
4cec 2SSIntegrase / 0.764
4cjs L0YIntegrase / 0.761
4cif JDXIntegrase / 0.755
3zsy OM3Integrase / 0.754
4cf2 3GMIntegrase / 0.754
4cgd 8P3Integrase / 0.754
4cf8 V7HIntegrase / 0.749
4cf0 O5UIntegrase / 0.745
3zsr O3NIntegrase / 0.738
4cez O3NIntegrase / 0.738
4cef D0TIntegrase / 0.728
4ces NFWIntegrase / 0.725
4cjk H39Integrase / 0.722
4ck1 OM1Integrase / 0.692
4cie Y7NIntegrase / 0.678
4ceo G0TIntegrase / 0.676
4ceq QCHIntegrase / 0.668
3zsv ZSVIntegrase / 0.661
4ceb ZSVIntegrase / 0.661
4cgg K5QIntegrase / 0.651
4fsn A58Serine/threonine-protein kinase Chk1 2.7.11.1 0.650