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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zsy OM3 Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zsy OM3Integrase / 1.005
4cjs L0YIntegrase / 0.930
3zsr O3NIntegrase / 0.913
4cez O3NIntegrase / 0.913
4ceq QCHIntegrase / 0.891
4cfb OM3Integrase / 0.888
3zt0 ZT0Integrase / 0.886
4cig X0PIntegrase / 0.879
4cjr FYMIntegrase / 0.874
3zsq O4NIntegrase / 0.872
3zcm PX3Integrase / 0.871
3zsx N44Integrase / 0.868
4ce9 O3NIntegrase / 0.858
4ck1 OM1Integrase / 0.852
4cif JDXIntegrase / 0.840
4cer VL4Integrase / 0.838
3zsv ZSVIntegrase / 0.833
4ceb ZSVIntegrase / 0.833
3zt1 OM1Integrase / 0.832
4ceo G0TIntegrase / 0.811
3zt2 ZT2Integrase / 0.810
3zt3 ZT4Integrase / 0.801
4cf8 V7HIntegrase / 0.795
4cjf RVNIntegrase / 0.782
4cec 2SSIntegrase / 0.774
4ces NFWIntegrase / 0.766
3zsw ZSWIntegrase / 0.757
4cea ZSWIntegrase / 0.757
3zsz OM2Integrase / 0.754
4cj3 E4FIntegrase / 0.750
4ced 9NSIntegrase / 0.749
4cee B0TIntegrase / 0.742
4cgd 8P3Integrase / 0.735
4cf0 O5UIntegrase / 0.725
4cgf UJ6Integrase / 0.725
4cf1 IY7Integrase / 0.723
4cgg K5QIntegrase / 0.721
4cgi NZLIntegrase / 0.711
4cf2 3GMIntegrase / 0.692
4ck3 K1TIntegrase / 0.691
4cie Y7NIntegrase / 0.684
4cju JNSIntegrase / 0.684
4cef D0TIntegrase / 0.678
4cgh LOZIntegrase / 0.678
4cgj NZLIntegrase / 0.674
4cfa WOPIntegrase / 0.660
4cfc 7NVIntegrase / 0.660