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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zoz ADP Phosphoglycerate kinase 1 2.7.2.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zoz ADPPhosphoglycerate kinase 1 2.7.2.3 1.138
2wzb ADPPhosphoglycerate kinase 1 2.7.2.3 1.100
1php ADPPhosphoglycerate kinase 2.7.2.3 0.739
2zgv ADPPhosphoglycerate kinase 1 2.7.2.3 0.729
2xe7 ADPPhosphoglycerate kinase 1 2.7.2.3 0.725
4c2u ANPDNA helicase / 0.674
1f0x FADD-lactate dehydrogenase 1.1.1.28 0.657
3h0l ADPAspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 6.3.5 0.653
4brd ANPEctonucleoside triphosphate diphosphohydrolase I / 0.653
4ptf DCPDNA polymerase epsilon catalytic subunit A 2.7.7.7 0.650