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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zlm ANP Adenosine monophosphate-protein transferase NmFic 2.7.7.n1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zlm ANPAdenosine monophosphate-protein transferase NmFic 2.7.7.n1 1.059
3se5 ANPAdenosine monophosphate-protein transferase NmFic 2.7.7.n1 0.935
3zec ANPAdenosine monophosphate-protein transferase SoFic 2.7.7.n1 0.826
3zcb ATPAdenosine monophosphate-protein transferase VbhT 2.7.7.n1 0.804
4u0s ADPAdenosine monophosphate-protein transferase FICD 2.7.7.n1 0.771
4x2d ATPFic family protein putative filamentation induced by cAMP protein / 0.740
2cvv ANPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.692
4u07 ATPAdenosine monophosphate-protein transferase FICD 2.7.7.n1 0.692
2y6p CTP3-deoxy-manno-octulosonate cytidylyltransferase 2.7.7.38 0.684
3tb9 ANPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.684
2cvx DGTRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.682
3s8a DGTRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.682
3s87 DGTRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.677
3ar4 ATPSarcoplasmic/endoplasmic reticulum calcium ATPase 1 3.6.3.8 0.675
3k8t DGTRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.674
3s6a ANPAdenosine monophosphate-protein transferase NmFic 2.7.7.n1 0.674
5c03 AGSNon-receptor tyrosine-protein kinase TYK2 2.7.10.2 0.666
2olq ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.664
1jsz NDMCap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2.1.1.57 0.660
2fjn 073Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 0.659
5eja TD62-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.659
4cvm ANPUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase / 0.658
1a2b GSPTransforming protein RhoA / 0.657
1q6p 213Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 0.657
1q6t 600Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 0.657
3m0e ATPTranscriptional regulator (NtrC family) / 0.657
1q6n P90Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 0.656
2cea ADPATP-dependent zinc metalloprotease FtsH / 0.655
2x60 GTPMannose-1-phosphate guanylyltransferase / 0.655
2oo7 AP5Adenylate kinase / 0.650
3zy3 GDPGDP-fucose protein O-fucosyltransferase 1 2.4.1.221 0.650
4qm6 GTPMetallophosphoesterase / 0.650