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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ziu LSS Leucyl-tRNA synthetase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ziu LSSLeucyl-tRNA synthetase / 1.231
5ah5 LSSLeucine--tRNA ligase / 0.897
1pg0 MODMethionine--tRNA ligase 6.1.1.10 0.735
1ivs VAAValine--tRNA ligase 6.1.1.9 0.721
1pfy MSPMethionine--tRNA ligase 6.1.1.10 0.706
3zgz 84TLeucine--tRNA ligase / 0.706
2ct8 MSPMethionine--tRNA ligase 6.1.1.10 0.688
2a84 ATPPantothenate synthetase 6.3.2.1 0.687
3cow 52HPantothenate synthetase 6.3.2.1 0.685
2re8 GSUGlutamine--tRNA ligase 6.1.1.18 0.675
3coy 53HPantothenate synthetase 6.3.2.1 0.663
3kfl ME8Putative methionyl-tRNA synthetase / 0.663
4pyt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.656
3afh GSUGlutamate--tRNA ligase 2 / 0.655
1qtq QSIGlutamine--tRNA ligase 6.1.1.18 0.651