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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zgf IUG Histo-blood group ABO system transferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zgf IUGHisto-blood group ABO system transferase / 1.229
5c1g GDUHisto-blood group ABO system transferase / 0.999
3v0m 5GWHisto-blood group ABO system transferase / 0.971
5c3a URMHisto-blood group ABO system transferase / 0.964
3v0n 4GWHisto-blood group ABO system transferase / 0.948
2vs5 GDUN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.947
5c8r UPGHisto-blood group ABO system transferase / 0.944
3v0p 4GWHisto-blood group ABO system transferase / 0.937
5c4f UPGHisto-blood group ABO system transferase / 0.934
5c4c UPGHisto-blood group ABO system transferase / 0.928
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.926
3v0o 4GWHisto-blood group ABO system transferase / 0.918
5c47 URMHisto-blood group ABO system transferase / 0.918
5c48 URMHisto-blood group ABO system transferase / 0.918
5c3b URMHisto-blood group ABO system transferase / 0.881
5c1l GDUHisto-blood group ABO system transferase / 0.879
5c4b UPGHisto-blood group ABO system transferase / 0.867
4kc1 WS1Histo-blood group ABO system transferase / 0.847
4kc4 WS3Histo-blood group ABO system transferase / 0.844
5c1h GDUHisto-blood group ABO system transferase / 0.843
4kc2 WS2Histo-blood group ABO system transferase / 0.813
1zdf UPGGlycogenin-1 2.4.1.186 0.806
1zdg UPGGlycogenin-1 2.4.1.186 0.783
1g8o U5PN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.774
3rmw UPGGlycogenin-1 2.4.1.186 0.742
1oqm UD2Beta-1,4-galactosyltransferase 1 / 0.724
3t7o UPGGlycogenin-1 2.4.1.186 0.708
1yro GDUBeta-1,4-galactosyltransferase 1 / 0.683
3mj4 URMUDP-galactopyranose mutase / 0.666
3gf4 UPGUDP-galactopyranose mutase 5.4.99.9 0.663
4ee3 UDHBeta-1,4-galactosyltransferase 1 / 0.662
1g9r UPFLgtC / 0.658
4pda CTNNucleoside permease / 0.658
3hdy GDUUDP-galactopyranose mutase / 0.654
3tij URINucleoside permease / 0.654
4pd6 URINucleoside permease / 0.653
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.652
3tw6 ADPPyruvate carboxylase / 0.651