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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zcn ATP Adenosine monophosphate-protein transferase SoFic 2.7.7.n1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zcn ATPAdenosine monophosphate-protein transferase SoFic 2.7.7.n1 1.062
3s6a ANPAdenosine monophosphate-protein transferase NmFic 2.7.7.n1 0.722
3zec ANPAdenosine monophosphate-protein transferase SoFic 2.7.7.n1 0.712
3zcb ATPAdenosine monophosphate-protein transferase VbhT 2.7.7.n1 0.688
4u07 ATPAdenosine monophosphate-protein transferase FICD 2.7.7.n1 0.685
4pb1 RBVNucleoside permease / 0.659
4okk U5P3'-5' exoribonuclease MT2234.1 / 0.653