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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zcm PX3 Integrase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zcm PX3Integrase / 1.093
3zsq O4NIntegrase / 1.085
4cig X0PIntegrase / 1.084
3zsv ZSVIntegrase / 1.022
4ceb ZSVIntegrase / 1.022
3zt0 ZT0Integrase / 1.012
4cif JDXIntegrase / 1.006
4cjr FYMIntegrase / 0.998
3zt1 OM1Integrase / 0.973
4ceo G0TIntegrase / 0.963
4ck1 OM1Integrase / 0.957
4cfb OM3Integrase / 0.948
3zsx N44Integrase / 0.923
4cjs L0YIntegrase / 0.922
4ceq QCHIntegrase / 0.910
4ce9 O3NIntegrase / 0.901
4cf8 V7HIntegrase / 0.880
4cer VL4Integrase / 0.877
3zsy OM3Integrase / 0.871
4cef D0TIntegrase / 0.863
4cju JNSIntegrase / 0.827
3zt2 ZT2Integrase / 0.810
4cgd 8P3Integrase / 0.810
4cee B0TIntegrase / 0.808
3zsz OM2Integrase / 0.798
4cgf UJ6Integrase / 0.791
4cjf RVNIntegrase / 0.785
4cgh LOZIntegrase / 0.778
4cie Y7NIntegrase / 0.770
4cgi NZLIntegrase / 0.769
4chq CWUIntegrase / 0.765
3zt3 ZT4Integrase / 0.740
4cf1 IY7Integrase / 0.669
3zsr O3NIntegrase / 0.668
4cez O3NIntegrase / 0.668
4cf2 3GMIntegrase / 0.668
4ced 9NSIntegrase / 0.656
4ces NFWIntegrase / 0.655