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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3wxy COA Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3wxy COAUncharacterized protein / 1.149
3wy0 COAUncharacterized protein / 1.048
2d52 COA5,7-dihydroxy-2-methylchromone synthase 2.3.1.216 0.762
1bq6 COAChalcone synthase 2 2.3.1.74 0.690
2d3m COA5,7-dihydroxy-2-methylchromone synthase 2.3.1.216 0.679
1chw HXCChalcone synthase 2 2.3.1.74 0.668
1d6h COAChalcone synthase 2 2.3.1.74 0.657
1ee0 CAA2-pyrone synthase / 0.657
4jaq COAAlpha-pyrone synthesis polyketide synthase-like Pks11 2.3.1 0.653
2prb COAAminoglycoside 6-N-acetyltransferase type Ib11 / 0.650