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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3wix LC3 Induced myeloid leukemia cell differentiation protein Mcl-1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3wix LC3Induced myeloid leukemia cell differentiation protein Mcl-1 / 1.453
3wiy LC6Induced myeloid leukemia cell differentiation protein Mcl-1 / 0.886
4hw2 19HInduced myeloid leukemia cell differentiation protein Mcl-1 / 0.696
4mbl 26LSerine/threonine-protein kinase pim-1 2.7.11.1 0.668
4ftk H9KSerine/threonine-protein kinase Chk1 2.7.11.1 0.667
1p4f DRGDeath-associated protein kinase 1 2.7.11.1 0.659
4ie0 PD2Alpha-ketoglutarate-dependent dioxygenase FTO / 0.658
2ard FDAFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.655
4hw3 19GInduced myeloid leukemia cell differentiation protein Mcl-1 / 0.652
4m8e 29VRetinoic acid receptor RXR-alpha / 0.651
2fme 3QCKinesin-like protein KIF11 / 0.650
2g5o DRQEstrogen receptor / 0.650