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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3w77 FMN FMN-dependent NADH-azoreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3w77 FMNFMN-dependent NADH-azoreductase / 1.120
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.762
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.747
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.746
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.743
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.740
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.738
4gi5 FADPutative NAD(P)H dehydrogenase (Quinone) / 0.733
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.731
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.731
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.729
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.723
4r81 FMNPredicted NADH dehydrogenase / 0.721
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.709
1qr2 FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.709
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.707
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.707
3klb FMNUncharacterized protein / 0.707
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.706
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.703
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.701
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.701
1t5b FMNFMN-dependent NADH-azoreductase / 0.699
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.699
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.698
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.697
3p82 FMNPentaerythritol tetranitrate reductase / 0.693
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.692
4j8p FMNFlavodoxin / 0.692
4qai FMNNADPH dehydrogenase / 0.688
4tmb FMNOld yellow enzyme / 0.688
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.687
2ohj FMNType A flavoprotein FprA 1 0.687
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.686
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.686
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.686
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 0.685
3p8j FMNPentaerythritol tetranitrate reductase / 0.685
4e2b FMNDehydrogenase / 0.685
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.685
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.684
2z9d FMNFMN-dependent NADH-azoreductase / 0.684
3hgs FMN12-oxophytodienoate reductase 3 1.3.1.42 0.681
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.680
3gye FMNDihydroorotate dehydrogenase (fumarate) / 0.678
1vyr FMNPentaerythritol tetranitrate reductase / 0.677
3p67 FMNPentaerythritol tetranitrate reductase / 0.677
3p74 FMNPentaerythritol tetranitrate reductase / 0.676
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.676
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.675
3l5l FMNXenobiotic reductase / 0.675
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.673
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.672
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.672
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.671
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.671
3aty FMNProstaglandin F2a synthase / 0.671
4tmc FMNOld yellow enzyme / 0.671
2q3r FMN12-oxophytodienoate reductase 1 1.3.1.42 0.670
3p8i FMNPentaerythritol tetranitrate reductase / 0.670
1h50 FMNPentaerythritol tetranitrate reductase / 0.669
3p84 FMNPentaerythritol tetranitrate reductase / 0.669
4ef8 FMNDihydroorotate dehydrogenase (fumarate) / 0.668
4jic FMNGTN Reductase / 0.668
1gwj FMNMorphinone reductase / 0.667
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.667
3f03 FMNPentaerythritol tetranitrate reductase / 0.667
2djl FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.666
3l67 FMNXenobiotic reductase / 0.666
3n19 FNRXenobiotic reductase / 0.665
4m5p FMNNADPH dehydrogenase / 0.665
4ef9 FMNDihydroorotate dehydrogenase (fumarate) / 0.664
2gjl FMNNitronate monooxygenase 1.13.12.16 0.662
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.662
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.662
1h51 FMNPentaerythritol tetranitrate reductase / 0.660
1jue FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.660
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.660
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.660
4rnv FMNNADPH dehydrogenase 1 1.6.99.1 0.660
4utm FNRXenobiotic reductase / 0.660
1jub FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.659
4e2d FMNDehydrogenase / 0.657
3p62 FMNPentaerythritol tetranitrate reductase / 0.656
2abb FMNPentaerythritol tetranitrate reductase / 0.655
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.655
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.655
4rnu FMNNADPH dehydrogenase 1 1.6.99.1 0.654
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.653
1h63 FMNPentaerythritol tetranitrate reductase / 0.652
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.652
2bf4 FMNNADPH--cytochrome P450 reductase / 0.652
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.651
1vhn FMNtRNA-dihydrouridine synthase / 0.650