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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3w5p 4OA Vitamin D3 receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3w5p 4OAVitamin D3 receptor / 1.310
3w5q 3KLVitamin D3 receptor / 1.272
3w5t LHPVitamin D3 receptor / 1.109
4q0a 4OAVitamin D3 receptor A / 1.103
1ot7 IU5Bile acid receptor / 0.761
2jn3 JN3Fatty acid-binding protein, liver / 0.761
2b04 CHOPhospholipase A2, major isoenzyme 3.1.1.4 0.741
2azz TCHPhospholipase A2, major isoenzyme 3.1.1.4 0.728
1eio GCHGastrotropin / 0.727
1o1v TCHGastrotropin / 0.727
3w5r LOAVitamin D3 receptor / 0.727
2qd4 CHDFerrochelatase, mitochondrial 4.99.1.1 0.725
4fhh 0U3Vitamin D3 receptor A / 0.723
1xu7 CPSCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.721
3f3y 4OABile salt sulfotransferase 2.8.2.14 0.714
2aa6 STRMineralocorticoid receptor / 0.712
1gwr ESTEstrogen receptor / 0.704
3cot STR3-oxo-5-beta-steroid 4-dehydrogenase / 0.696
1g50 ESTEstrogen receptor / 0.689
1sqn NDRProgesterone receptor / 0.688
1y9r 1CAMineralocorticoid receptor / 0.686
2yja ESTEstrogen receptor / 0.685
1xu9 CPSCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.684
3g1r FIT3-oxo-5-beta-steroid 4-dehydrogenase / 0.683
3dey DHTEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.679
3klm DHTEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.679
3q95 ESLEstrogen receptor / 0.679
2aa5 STRMineralocorticoid receptor / 0.678
2piu DHTAndrogen receptor / 0.676
1f5f DHTSex hormone-binding globulin / 0.674
2hrc CHDFerrochelatase, mitochondrial 4.99.1.1 0.674
1lke DOGBilin-binding protein / 0.673
2pkl DHTAndrogen receptor / 0.673
3mne DEXGlucocorticoid receptor / 0.673
4at2 ASDPossible succinate dehydrogenase / 0.673
1lhn AONSex hormone-binding globulin / 0.672
2aa7 1CAMineralocorticoid receptor / 0.672
2pio DHTAndrogen receptor / 0.672
5dxg ESTEstrogen receptor / 0.672
2ab2 SNLMineralocorticoid receptor / 0.671
2z4j DHTAndrogen receptor / 0.670
3hcr CHDFerrochelatase, mitochondrial 4.99.1.1 0.670
3up0 D7SaceDAF-12 / 0.669
1fm4 DXCMajor pollen allergen Bet v 1-L / 0.668
2j7x ESTEstrogen receptor beta / 0.668
2rlc CHDCholoylglycine hydrolase 3.5.1.24 0.667
1lhv NOGSex hormone-binding globulin / 0.666
1nax IH5Thyroid hormone receptor beta / 0.664
1qyx ASDEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.664
3uud ESTEstrogen receptor / 0.664
1gs4 ZK5Androgen receptor / 0.663
1t63 DHTAndrogen receptor / 0.663
1lnm DTXBilin-binding protein / 0.662
1yb1 AOIEstradiol 17-beta-dehydrogenase 11 1.1.1.62 0.661
3d90 NOGProgesterone receptor / 0.661
1xj7 DHTAndrogen receptor / 0.660
2q7i TESAndrogen receptor / 0.660
5hyr ESTEstrogen receptor / 0.660
3vhu SNLMineralocorticoid receptor / 0.656
2piw DHTAndrogen receptor / 0.655
2pnj CHDFerrochelatase, mitochondrial 4.99.1.1 0.651
2q7k TESAndrogen receptor / 0.651
4hlw TESAndrogen receptor / 0.650