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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3w0j T08 Vitamin D3 receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3w0j T08Vitamin D3 receptor / 1.488
3w0i O11Vitamin D3 receptor / 1.124
3w0h W12Vitamin D3 receptor / 1.044
3w0g W07Vitamin D3 receptor / 1.014
4fhh 0U3Vitamin D3 receptor A / 0.967
3w0c 6DSVitamin D3 receptor / 0.938
3w0a DS5Vitamin D3 receptor / 0.911
4fhi 0S4Vitamin D3 receptor A / 0.867
3w0y DS4Vitamin D3 receptor / 0.832
3vrv YSDVitamin D3 receptor / 0.817
2zl9 VDAVitamin D3 receptor / 0.774
1rjk VDZVitamin D3 receptor / 0.767
3vtc TK3Vitamin D3 receptor / 0.765
1s0z EB1Vitamin D3 receptor / 0.764
1s19 MC9Vitamin D3 receptor / 0.755
4ia3 BIVVitamin D3 receptor A / 0.755
1rk3 VDXVitamin D3 receptor / 0.754
1txi TX5Vitamin D3 receptor / 0.754
2zlc VDXVitamin D3 receptor / 0.750
3vt8 YI3Vitamin D3 receptor / 0.750
4rup H97Vitamin D3 receptor A / 0.748
3vt7 VDXVitamin D3 receptor / 0.745
3vtd TKDVitamin D3 receptor / 0.737
2har OCCVitamin D3 receptor / 0.734
2zla VDBVitamin D3 receptor / 0.733
3vt3 VDXVitamin D3 receptor / 0.731
4ia2 BIVVitamin D3 receptor A / 0.729
4ia7 BIVVitamin D3 receptor A / 0.729
4ruj VDXVitamin D3 receptor A / 0.726
1ie8 KH1Vitamin D3 receptor / 0.725
1rkh VD2Vitamin D3 receptor / 0.723
3vru YS3Vitamin D3 receptor / 0.721
4g2i 0VQVitamin D3 receptor / 0.714
4g1d 0VKVitamin D3 receptor A / 0.701
4g2h 0VQVitamin D3 receptor A / 0.694
2hbh XE4Vitamin D3 receptor A / 0.689
4g21 0VPVitamin D3 receptor A / 0.686
4itf TFYVitamin D3 receptor / 0.682
4ite TEYVitamin D3 receptor / 0.668
1ie9 VDXVitamin D3 receptor / 0.667
2hcd BIVVitamin D3 receptor A / 0.660
4e5l DBHPolymerase acidic protein / 0.659
2o4r VD5Vitamin D3 receptor / 0.655
2o4j VD4Vitamin D3 receptor / 0.651
3w5r LOAVitamin D3 receptor / 0.650