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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3w0g W07 Vitamin D3 receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3w0g W07Vitamin D3 receptor / 1.376
3w0j T08Vitamin D3 receptor / 1.014
3w0h W12Vitamin D3 receptor / 0.993
3w0i O11Vitamin D3 receptor / 0.951
4fhi 0S4Vitamin D3 receptor A / 0.764
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1rk3 VDXVitamin D3 receptor / 0.737
3w0a DS5Vitamin D3 receptor / 0.734
3w0c 6DSVitamin D3 receptor / 0.733
4g1d 0VKVitamin D3 receptor A / 0.725
3vtd TKDVitamin D3 receptor / 0.705
3vrv YSDVitamin D3 receptor / 0.703
4fhh 0U3Vitamin D3 receptor A / 0.690
1rkh VD2Vitamin D3 receptor / 0.684
4g20 484Vitamin D3 receptor A / 0.675
4itf TFYVitamin D3 receptor / 0.675
3vrt YS2Vitamin D3 receptor / 0.661
3vtb TKAVitamin D3 receptor / 0.660
3vru YS3Vitamin D3 receptor / 0.656
4g1z 0VPVitamin D3 receptor A / 0.654
2zlc VDXVitamin D3 receptor / 0.651