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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vqs JT1 Genome polyprotein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vqs JT1Genome polyprotein / 1.640
3qgi 33FGenome polyprotein 2.7.7.48 0.971
3qgf 46FGenome polyprotein 2.7.7.48 0.903
3qge 26FGenome polyprotein 2.7.7.48 0.838
3qgd 26SGenome polyprotein 2.7.7.48 0.828
4e5i 0N9Polymerase acidic protein / 0.744
4e5f 0N7Polymerase acidic protein / 0.660
3fmz 2T1Retinol-binding protein 4 / 0.651