sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3vhu | SNL | Mineralocorticoid receptor |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3vhu | SNL | Mineralocorticoid receptor | / | 1.257 | |
| 2aa7 | 1CA | Mineralocorticoid receptor | / | 0.978 | |
| 2aa6 | STR | Mineralocorticoid receptor | / | 0.963 | |
| 2aa2 | AS4 | Mineralocorticoid receptor | / | 0.948 | |
| 2oax | SNL | Mineralocorticoid receptor | / | 0.918 | |
| 2aax | PDN | Mineralocorticoid receptor | / | 0.822 | |
| 2abi | 1CA | Mineralocorticoid receptor | / | 0.815 | |
| 1sqn | NDR | Progesterone receptor | / | 0.808 | |
| 2w8y | 486 | Progesterone receptor | / | 0.795 | |
| 2w8y | NDR | Progesterone receptor | / | 0.783 | |
| 4uda | DEX | Mineralocorticoid receptor | / | 0.780 | |
| 1ya3 | STR | Mineralocorticoid receptor | / | 0.750 | |
| 2ab2 | SNL | Mineralocorticoid receptor | / | 0.745 | |
| 2piq | DHT | Androgen receptor | / | 0.741 | |
| 1e3k | R18 | Progesterone receptor | / | 0.734 | |
| 4k7a | DHT | Androgen receptor | / | 0.730 | |
| 2ovh | AS0 | Progesterone receptor | / | 0.729 | |
| 3mne | DEX | Glucocorticoid receptor | / | 0.716 | |
| 3d90 | NOG | Progesterone receptor | / | 0.709 | |
| 2ovm | AS0 | Progesterone receptor | / | 0.708 | |
| 2aa5 | STR | Mineralocorticoid receptor | / | 0.703 | |
| 4nky | 3QZ | Steroid 17-alpha-hydroxylase/17,20 lyase | / | 0.702 | |
| 2pir | DHT | Androgen receptor | / | 0.700 | |
| 3mnp | DEX | Glucocorticoid receptor | / | 0.698 | |
| 1t7f | DHT | Androgen receptor | / | 0.696 | |
| 4p6x | HCY | Glucocorticoid receptor | / | 0.695 | |
| 1xow | R18 | Androgen receptor | / | 0.688 | |
| 4udc | DEX | Glucocorticoid receptor | / | 0.688 | |
| 1qyx | ASD | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.687 | |
| 4at2 | ASD | Possible succinate dehydrogenase | / | 0.687 | |
| 4j26 | EST | Estrogen receptor beta | / | 0.687 | |
| 3zqt | TES | Androgen receptor | / | 0.685 | |
| 1i5r | HYC | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.682 | |
| 2j7y | E3O | Estrogen receptor beta | / | 0.682 | |
| 1y9r | 1CA | Mineralocorticoid receptor | / | 0.674 | |
| 4apu | A2K | Progesterone receptor | / | 0.674 | |
| 2qpy | DHT | Androgen receptor | / | 0.671 | |
| 3cav | CI2 | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.671 | |
| 3cot | STR | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.671 | |
| 3mno | DEX | Glucocorticoid receptor | / | 0.671 | |
| 4klr | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.668 | |
| 2cbo | TH2 | Neocarzinostatin | / | 0.662 | |
| 1l2i | ETC | Estrogen receptor | / | 0.661 | |
| 1irj | CPS | Protein S100-A9 | / | 0.660 | |
| 4a2j | AS0 | Progesterone receptor | / | 0.657 | |
| 3w5p | 4OA | Vitamin D3 receptor | / | 0.656 | |
| 2d06 | EST | Sulfotransferase 1A1 | 2.8.2.1 | 0.653 | |
| 1xq3 | R18 | Androgen receptor | / | 0.650 | |
| 3l03 | 4OH | Estrogen receptor | / | 0.650 |