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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vas ADN Putative adenosine kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vas ADNPutative adenosine kinase / 0.976
3uq6 ADNPutative adenosine kinase / 0.909
4dc3 2FAPutative adenosine kinase / 0.886
3uq9 TBNPutative adenosine kinase / 0.875
3vaq ADNPutative adenosine kinase / 0.854
2a9y 26AAdenosine kinase 2.7.1.20 0.777
3otx AP5Adenosine kinase, putative / 0.772
2a9z 26AAdenosine kinase 2.7.1.20 0.766
2ab8 MTPAdenosine kinase 2.7.1.20 0.748
2i6a 5I5Adenosine kinase 2.7.1.20 0.708
2pkm ADNAdenosine kinase 2.7.1.20 0.678
2x1l ADNMethionine--tRNA ligase / 0.675
2pkk 2FAAdenosine kinase 2.7.1.20 0.669
3kpb SAMUncharacterized protein MJ0100 / 0.669
1kr5 SAHProtein-L-isoaspartate(D-aspartate) O-methyltransferase 2.1.1.77 0.661
3p9k SAHCaffeic acid O-methyltransferase / 0.653
2wzb ADPPhosphoglycerate kinase 1 2.7.2.3 0.650