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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3v4t UD1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3v4t UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.233
3swq EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.080
3lth UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.063
1ryw EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.050
3upk UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.045
3vcy UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.019
1q3g UDAUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.999
3kr6 UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.996
4r7u UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.977
3kqj UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.962
2yvw EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.942
1uae UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.911
2rl1 UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.910
2rl2 UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.904
3iss EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.883
1a2n TETUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.761