Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3v0m 5GW Histo-blood group ABO system transferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3v0m 5GWHisto-blood group ABO system transferase / 1.244
5c3a URMHisto-blood group ABO system transferase / 1.024
5c1g GDUHisto-blood group ABO system transferase / 1.004
3zgf IUGHisto-blood group ABO system transferase / 0.971
5c3b URMHisto-blood group ABO system transferase / 0.969
5c48 URMHisto-blood group ABO system transferase / 0.944
5c4f UPGHisto-blood group ABO system transferase / 0.940
3rmw UPGGlycogenin-1 2.4.1.186 0.934
5c47 URMHisto-blood group ABO system transferase / 0.927
5c8r UPGHisto-blood group ABO system transferase / 0.923
3v0n 4GWHisto-blood group ABO system transferase / 0.922
2vs5 GDUN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.912
5c1l GDUHisto-blood group ABO system transferase / 0.910
5c4c UPGHisto-blood group ABO system transferase / 0.910
4kc4 WS3Histo-blood group ABO system transferase / 0.909
4kc1 WS1Histo-blood group ABO system transferase / 0.908
3v0p 4GWHisto-blood group ABO system transferase / 0.900
5c1h GDUHisto-blood group ABO system transferase / 0.895
1zdf UPGGlycogenin-1 2.4.1.186 0.889
1zdg UPGGlycogenin-1 2.4.1.186 0.889
5c4b UPGHisto-blood group ABO system transferase / 0.886
4kc2 WS2Histo-blood group ABO system transferase / 0.869
3v0o 4GWHisto-blood group ABO system transferase / 0.837
1g8o U5PN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.826
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.754
1ss9 UPFLgtC / 0.732
1yro GDUBeta-1,4-galactosyltransferase 1 / 0.708
1g9r UPFLgtC / 0.702
4pda CTNNucleoside permease / 0.688
4ee3 UDHBeta-1,4-galactosyltransferase 1 / 0.681
3hdy GDUUDP-galactopyranose mutase / 0.680
3gf4 UPGUDP-galactopyranose mutase 5.4.99.9 0.675
4pd6 URINucleoside permease / 0.675
3t7o UPGGlycogenin-1 2.4.1.186 0.674
4nv1 0FXFormyl transferase / 0.670
2w4k ADPDeath-associated protein kinase 1 2.7.11.1 0.667
3wnz ADPAlanine--anticapsin ligase / 0.667
2fyc GDUBeta-1,4-galactosyltransferase 1 2.4.1 0.664
4ysj ADPCalmodulin-like domain protein kinase / 0.664
1j7l ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.663
3fhi ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.659
3fjq ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.653
3tw6 ADPPyruvate carboxylase / 0.652
3tij URINucleoside permease / 0.651
3wo0 ADPAlanine--anticapsin ligase / 0.651
5iqb GNPBifunctional AAC/APH 2.3.1 0.651
5iqd GNPBifunctional AAC/APH 2.3.1 0.651