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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3utd 0CJ 4-hydroxy-3-methylbut-2-enyl diphosphate reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3utd 0CJ4-hydroxy-3-methylbut-2-enyl diphosphate reductase / 0.970
3ke8 EIP4-hydroxy-3-methylbut-2-enyl diphosphate reductase / 0.742
3zgn 10G4-hydroxy-3-methylbut-2-enyl diphosphate reductase / 0.693
3kem IPE4-hydroxy-3-methylbut-2-enyl diphosphate reductase / 0.690
4h4e 10G4-hydroxy-3-methylbut-2-enyl diphosphate reductase / 0.689
4h4c 10D4-hydroxy-3-methylbut-2-enyl diphosphate reductase / 0.671
4eb3 0O34-hydroxy-3-methylbut-2-enyl diphosphate reductase / 0.670
3vx4 ATPPutative ABC transporter, ATP-binding protein ComA / 0.651