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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3uqd ATP ATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3uqd ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 1.126
3umo ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 1.077
3ump ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 1.041
3uqd ADPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.793
4o1g AGSAdenosine kinase 2.7.1.20 0.733
5c3z ACPRibokinase / 0.717
2pkn ACPAdenosine kinase 2.7.1.20 0.712
2ab8 ACPAdenosine kinase 2.7.1.20 0.696
2f02 ATPTagatose-6-phosphate kinase / 0.688
5c3y AN2Ribokinase / 0.685
3zs7 ATPPyridoxine/pyridoxal/pyridoxamine kinase / 0.683
2xau ADPPre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 3.6.4.13 0.681
1h8h ADPATP synthase subunit alpha, mitochondrial / 0.677
1h8h ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.677
2fyc GDUBeta-1,4-galactosyltransferase 1 2.4.1 0.677
4s1h ADPPyridoxal kinase, putative / 0.674
2dcn ADP2-keto-3-deoxy-gluconate kinase / 0.672
3otx AP5Adenosine kinase, putative / 0.660
3go6 ADPRibokinase / 0.657
1bmf ADPATP synthase subunit alpha, mitochondrial / 0.651
1bmf ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.651