1.980 Å
X-ray
2009-03-18
Name: | Ribokinase |
---|---|
ID: | P71913_MYCTU |
AC: | P71913 |
Organism: | Mycobacterium tuberculosis |
Reign: | Bacteria |
TaxID: | 83332 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 27.601 |
---|---|
Number of residues: | 36 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 4 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.982 | 253.125 |
% Hydrophobic | % Polar |
---|---|
57.33 | 42.67 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 64.69 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-8.06111 | -1.52219 | 31.7878 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5' | CB | THR- 210 | 4.03 | 0 | Hydrophobic |
C3' | CB | THR- 210 | 4.34 | 0 | Hydrophobic |
O3' | O | GLY- 215 | 2.63 | 153.47 | H-Bond (Ligand Donor) |
C2' | CB | ALA- 229 | 4.37 | 0 | Hydrophobic |
O1B | OG1 | THR- 237 | 3.4 | 158.76 | H-Bond (Protein Donor) |
O3B | N | GLY- 241 | 2.87 | 160.56 | H-Bond (Protein Donor) |
C4' | CD1 | PHE- 244 | 4.14 | 0 | Hydrophobic |
O2' | O | CYS- 270 | 2.89 | 126.96 | H-Bond (Ligand Donor) |
O5' | O | HOH- 462 | 3.46 | 130.46 | H-Bond (Protein Donor) |