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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3uq9 TBN Putative adenosine kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3uq9 TBNPutative adenosine kinase / 1.025
4dc3 2FAPutative adenosine kinase / 0.901
3vaq ADNPutative adenosine kinase / 0.885
3uq6 ADNPutative adenosine kinase / 0.875
3vas ADNPutative adenosine kinase / 0.875
2i6a 5I5Adenosine kinase 2.7.1.20 0.793
2a9z 26AAdenosine kinase 2.7.1.20 0.788
2a9y 26AAdenosine kinase 2.7.1.20 0.785
3otx AP5Adenosine kinase, putative / 0.781
2ab8 MTPAdenosine kinase 2.7.1.20 0.764
2pkm ADNAdenosine kinase 2.7.1.20 0.725
5jr3 SAHCarminomycin 4-O-methyltransferase DnrK 2.1.1.292 0.716
4ube 2FAAdenosine kinase 2.7.1.20 0.677
2pkk 2FAAdenosine kinase 2.7.1.20 0.675
4nec SAHPutative SAM-dependent methyltransferase / 0.665
4yuz S4MSpermidine synthase, putative / 0.664
4o8j ADNRNA 3'-terminal phosphate cyclase 6.5.1.4 0.657
3mv5 XFERAC-alpha serine/threonine-protein kinase 2.7.11.1 0.655
2zgv ADPPhosphoglycerate kinase 1 2.7.2.3 0.654
5aqz SGVHeat shock 70 kDa protein 1A / 0.654
2bzg SAHThiopurine S-methyltransferase 2.1.1.67 0.653
2o07 MTASpermidine synthase 2.5.1.16 0.650
3dzi RGTADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.650
4y9d NAIC alpha-dehydrogenase / 0.650