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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3unk 0BY Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3unk 0BYCyclin-dependent kinase 2 2.7.11.22 1.151
3unj 0BXCyclin-dependent kinase 2 2.7.11.22 0.854
2vww 7X2Ephrin type-B receptor 4 2.7.10.1 0.694
2x9f X9FEphrin type-B receptor 4 2.7.10.1 0.681
2vx0 7X7Ephrin type-B receptor 4 2.7.10.1 0.673
1nxk STUMAP kinase-activated protein kinase 2 2.7.11.1 0.665
4c3f 7KWTyrosine-protein kinase Lck 2.7.10.2 0.664
2vx1 7X8Ephrin type-B receptor 4 2.7.10.1 0.658
2vwz 7X6Ephrin type-B receptor 4 2.7.10.1 0.657
4hjo AQ4Epidermal growth factor receptor 2.7.10.1 0.656
2w06 FRVCyclin-dependent kinase 2 2.7.11.22 0.655
4lmu QUESerine/threonine-protein kinase pim-1 2.7.11.1 0.655
3ue4 DB8Tyrosine-protein kinase ABL1 2.7.10.2 0.653
3rpy 27ZCyclin-dependent kinase 2 2.7.11.22 0.651
3s1h 56ZCyclin-dependent kinase 2 2.7.11.22 0.651
1pxp CK8Cyclin-dependent kinase 2 2.7.11.22 0.650