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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3umo ATP ATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3umo ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 1.227
3ump ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 1.188
3uqd ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 1.077
3uqd ADPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.832
4o1g AGSAdenosine kinase 2.7.1.20 0.719
5c41 ACPRibokinase / 0.710
4lfv YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.698
5c40 ACPRibokinase / 0.698
5c3z ACPRibokinase / 0.696
2ab8 ACPAdenosine kinase 2.7.1.20 0.695
4s1h ADPPyridoxal kinase, putative / 0.694
3rye UNRFarnesyl pyrophosphate synthase 2.5.1.10 0.675
4aw1 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.674
1phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.672
3ldw ZOLFarnesyl pyrophosphate synthase, putative / 0.671
2f02 ATPTagatose-6-phosphate kinase / 0.670
2pkn ACPAdenosine kinase 2.7.1.20 0.670
2xau ADPPre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 3.6.4.13 0.670
1nhh ANPDNA mismatch repair protein MutL / 0.665
4c2u ANPDNA helicase / 0.662
4nke RISFarnesyl pyrophosphate synthase 2.5.1.10 0.662
3ncq ATPNitrogen regulatory protein P-II (GlnB-2) / 0.660
1rkd ADPRibokinase / 0.657
2aa0 MTPAdenosine kinase 2.7.1.20 0.657
3icz PB6Farnesyl pyrophosphate synthase / 0.657
3rqh B6PADP-dependent (S)-NAD(P)H-hydrate dehydratase / 0.654
3otx AP5Adenosine kinase, putative / 0.653
3ll9 ADPIsopentenyl phosphate kinase / 0.651
4dh3 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.650
4dh5 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.650