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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ua3 SAH Protein arginine N-methyltransferase 5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ua3 SAHProtein arginine N-methyltransferase 5 / 1.062
3dlc SAMSAM (And some other nucleotide) binding motif:Generic methyltransferase / 0.716
4g56 SAHProtein arginine N-methyltransferase 5 / 0.701
5fa5 MTAProtein arginine N-methyltransferase 5 / 0.701
4gqb 0XUProtein arginine N-methyltransferase 5 / 0.700
1qao SAMrRNA adenine N-6-methyltransferase 2.1.1.184 0.693
3iei SAHLeucine carboxyl methyltransferase 1 2.1.1.233 0.693
4dcm SAMRibosomal RNA large subunit methyltransferase G 2.1.1.174 0.693
3o7w SAMLeucine carboxyl methyltransferase 1 2.1.1.233 0.689
5dst SAHProtein arginine N-methyltransferase 8 2.1.1 0.689
4hh4 SAHCcbJ / 0.681
1ori SAHProtein arginine N-methyltransferase 1 / 0.677
4uy6 SAHHistidine N-alpha-methyltransferase / 0.672
3e8s SAHUncharacterized protein / 0.670
4m37 SAHProtein arginine N-methyltransferase 7 2.1.1 0.670
5icf SAH(S)-norcoclaurine 6-O-methyltransferase / 0.670
3p9k SAHCaffeic acid O-methyltransferase / 0.668
5ccx SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.667
1qaq SFGrRNA adenine N-6-methyltransferase 2.1.1.184 0.666
3gwz SAHMitomycin biosynthesis 6-O-methyltransferase / 0.664
5jr3 SAHCarminomycin 4-O-methyltransferase DnrK 2.1.1.292 0.663
2y1w SFGHistone-arginine methyltransferase CARM1 / 0.658
2zfu SAHRibosomal RNA-processing protein 8 / 0.658
4a6d SAMAcetylserotonin O-methyltransferase 2.1.1.4 0.658
5dx8 SFGHistone-arginine methyltransferase CARM1 / 0.657
2v74 SAHHistone-arginine methyltransferase CARM1 / 0.656
3sxj SAMPutative methyltransferase / 0.654
1f3l SAHProtein arginine N-methyltransferase 3 / 0.652
2zw9 SAMtRNA wybutosine-synthesizing protein 4 2.1.1.290 0.651
5ccb SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.650
5dwq SFGHistone-arginine methyltransferase CARM1 / 0.650