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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3u8d U8D Phospholipase A2, membrane associated

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3u8d U8DPhospholipase A2, membrane associated / 1.140
1db4 8INPhospholipase A2, membrane associated / 0.904
1db5 6INPhospholipase A2, membrane associated / 0.847
1dcy I3NPhospholipase A2, membrane associated / 0.799
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1kvo OAPPhospholipase A2, membrane associated / 0.650