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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3u2l FAD FAD-linked sulfhydryl oxidase ALR 1.8.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3u2l FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.426
3u5s FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.331
3tk0 FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.295
4ldk FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.279
3u2m FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.258
3w4y FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 1.142
3mbg FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.140
1oqc FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.129
4e0h FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 1.074
3r7c FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.048
1jra FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 1.013
1jr8 FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 1.012
2hj3 FADFAD-linked sulfhydryl oxidase ERV1 / 0.931
4e0i FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.921
3llk FADSulfhydryl oxidase 1 1.8.3.2 0.874
3lli FADSulfhydryl oxidase 1 1.8.3.2 0.839
3t58 FADSulfhydryl oxidase 1 1.8.3.2 0.829
3gwl FADFAD-linked sulfhydryl oxidase 1.8.3.2 0.804
3t59 FADSulfhydryl oxidase 1 1.8.3.2 0.800
3td7 FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.774
3gwn FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.749
4p2l FADSulfhydryl oxidase 1 1.8.3.2 0.727
3qzy FADFAD-linked sulfhydryl oxidase / 0.719
4opt FDAConserved Archaeal protein / 0.683
3ust FADAcMNPV orf92 / 0.680
2cdu FADNADH oxidase / 0.663
4opg FDAConserved Archaeal protein / 0.662
4hj4 FMNLOV protein / 0.661
3dk9 FADGlutathione reductase, mitochondrial 1.8.1.7 0.659
3atq FDAConserved Archaeal protein / 0.658
1n9n FMNPutative blue light receptor / 0.652
5ahk FADAcetolactate synthase II, large subunit / 0.652
1fl2 FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.651
4opu FDAConserved Archaeal protein / 0.651