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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3tx1 FAD UDP-N-acetylenolpyruvoylglucosamine reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3tx1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.444
1hsk FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.122
2gqt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.064
4jb1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.062
4jay FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.052
4pyt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.028
3i99 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.978
4bby FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.921
4bca FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.894
4bc7 FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.885
2uuv FADAlkyldihydroxyacetonephosphate synthase 2.5.1.26 0.880
1mbt FADUDP-N-acetylenolpyruvoylglucosamine reductase 1.3.1.98 0.878
4fdn FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.842
3pm9 FADPutative oxidoreductase / 0.840
4aut FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.812
1f0x FADD-lactate dehydrogenase 1.1.1.28 0.806
4feh FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.796
4ysw FADXanthine dehydrogenase/oxidase / 0.794
1wyg FADXanthine dehydrogenase/oxidase / 0.792
4zoh FADPutative oxidoreductase FAD-binding subunit / 0.771
4fdp FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.764
4f4q FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.735
1ffu FADCarbon monoxide dehydrogenase medium chain / 0.706
2q4w FADCytokinin dehydrogenase 7 1.5.99.12 0.675
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.673
2yqu FADDihydrolipoyl dehydrogenase / 0.660
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.655
2a84 ATPPantothenate synthetase 6.3.2.1 0.654