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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3tr9 PT1 Dihydropteroate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3tr9 PT1Dihydropteroate synthase / 0.965
2y5s 78HDihydropteroate synthase / 0.816
3tye XTZDihydropteroate synthase / 0.718
2dzb HH2Dihydropteroate synthase / 0.699
2bmb PMMFolic acid synthesis protein FOL1 / 0.684
3h24 B55Dihydropteroate synthase / 0.679
3tyc XHPDihydropteroate synthase / 0.674
3h2n B62Dihydropteroate synthase / 0.670
3tyd XHPDihydropteroate synthase / 0.668
1aj2 2PHDihydropteroate synthase / 0.664
1tww HH2Dihydropteroate synthase / 0.662
1kqg MGDFormate dehydrogenase, nitrate-inducible, major subunit 1.1.5.6 0.650