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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3tr0 5GP Guanylate kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3tr0 5GPGuanylate kinase / 1.028
3lnc 5GPGuanylate kinase / 0.804
1lvg 5GPGuanylate kinase 2.7.4.8 0.796
2j41 5GPGuanylate kinase / 0.788
2anb 5GPGuanylate kinase 2.7.4.8 0.784
1ex7 5GPGuanylate kinase 2.7.4.8 0.754
1gky 5GPGuanylate kinase 2.7.4.8 0.735
2an9 GDPGuanylate kinase 2.7.4.8 0.705
1zny GDPGuanylate kinase 2.7.4.8 0.680
3d2r ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial 2.7.11.2 0.659