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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3tlj SAH Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3tlj SAHUncharacterized protein / 0.955
3tm4 SAMUncharacterized protein / 0.877
3tm5 SFGUncharacterized protein / 0.822
2f8l SAMLmo1582 protein / 0.738
4rtj SFGDNA adenine methylase 2.1.1.72 0.727
4rtq SAHDNA adenine methylase 2.1.1.72 0.713
2c7q SAHModification methylase HhaI 2.1.1.37 0.710
4rtk SAHDNA adenine methylase 2.1.1.72 0.708
3ldg SAHUncharacterized protein / 0.707
2g1p SAHDNA adenine methylase 2.1.1.72 0.704
3mht SAHModification methylase HhaI 2.1.1.37 0.701
1skm SAHModification methylase HhaI 2.1.1.37 0.698
2okc SAMProbable type I restriction enzyme BthVORF4518P M protein 2.1.1.72 0.698
2z6u SAHModification methylase HhaI 2.1.1.37 0.698
2i9k SAHModification methylase HhaI 2.1.1.37 0.697
3b3f SAHHistone-arginine methyltransferase CARM1 / 0.696
2uyh SAHModification methylase HhaI 2.1.1.37 0.694
4u7t SAHDNA (cytosine-5)-methyltransferase 3A 2.1.1.37 0.691
3lcv SAM16S rRNA (guanine(1405)-N(7))-methyltransferase 2.1.1.179 0.685
1yf3 SAHDNA adenine methylase / 0.682
2y1w SFGHistone-arginine methyltransferase CARM1 / 0.680
2zif SAMMethyltransferase / 0.680
4mht SAHModification methylase HhaI 2.1.1.37 0.680
2dpm SAMModification methylase DpnIIA 2.1.1.72 0.679
4rto SFGDNA adenine methylase 2.1.1.72 0.679
7mht SAHModification methylase HhaI 2.1.1.37 0.679
4rtm SAMDNA adenine methylase 2.1.1.72 0.676
2yx1 SFGtRNA (guanine(37)-N1)-methyltransferase Trm5b 2.1.1.228 0.675
3lcu SAH16S rRNA (guanine(1405)-N(7))-methyltransferase 2.1.1.179 0.675
3swr SFGDNA (cytosine-5)-methyltransferase 1 2.1.1.37 0.675
4dkj SAHCytosine-specific methyltransferase / 0.671
4obw SAM2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial / 0.671
1g60 SAMModification methylase MboII 2.1.1.72 0.668
4gek GEKCarboxy-S-adenosyl-L-methionine synthase / 0.666
2a14 SAHIndolethylamine N-methyltransferase 2.1.1.49 0.665
4fp9 SAM5-methylcytosine rRNA methyltransferase NSUN4 2.1.1 0.664
3pt9 SAHDNA (cytosine-5)-methyltransferase 1 2.1.1.37 0.662
4hh4 SAHCcbJ / 0.661
3a27 SAMtRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase / 0.660
4r6x SAHPhosphoethanolamine N-methyltransferase / 0.659
2zcj SAHModification methylase HhaI 2.1.1.37 0.658
3kpj SAHPhenylethanolamine N-methyltransferase 2.1.1.28 0.658
4rtr SAMDNA adenine methylase 2.1.1.72 0.658
9mht SAHModification methylase HhaI 2.1.1.37 0.658
4fzv SAM5-methylcytosine rRNA methyltransferase NSUN4 2.1.1 0.657
5mht SAHModification methylase HhaI 2.1.1.37 0.657
2yxl SFG450aa long hypothetical fmu protein / 0.656
3v97 SAHRibosomal RNA large subunit methyltransferase K/L 2.1.1.173 0.656
5dxj SFGHistone-arginine methyltransferase CARM1 / 0.656
1r00 SAHAclacinomycin 10-hydroxylase RdmB 4.1.1 0.655
2i62 SAHNicotinamide N-methyltransferase 2.1.1.1 0.655
1g38 NEAModification methylase TaqI 2.1.1.72 0.654
10mh SAHModification methylase HhaI 2.1.1.37 0.653
3lct ADPALK tyrosine kinase receptor 2.7.10.1 0.653
3a25 SAMtRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase / 0.652
2uyq SAMPutative S-adenosyl-L-methionine-dependent methyltransferase ML2640 2.1.1 0.651
4rts SAMDNA adenine methylase 2.1.1.72 0.651
2ibt NEAModification methylase TaqI 2.1.1.72 0.650
3a26 MTAtRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase / 0.650