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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3td7 FAD Probable FAD-linked sulfhydryl oxidase R596 1.8.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3td7 FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 1.405
3gwn FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.844
4e0i FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.803
3tk0 FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.788
3u5s FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.782
4ldk FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.779
3u2l FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.774
3t58 FADSulfhydryl oxidase 1 1.8.3.2 0.767
1jr8 FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.764
1oqc FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.748
4e0h FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.747
3llk FADSulfhydryl oxidase 1 1.8.3.2 0.738
3lli FADSulfhydryl oxidase 1 1.8.3.2 0.726
1jra FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.722
3t59 FADSulfhydryl oxidase 1 1.8.3.2 0.696
4opg FDAConserved Archaeal protein / 0.670
3w4y FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.661
4rek FADCholesterol oxidase 1.1.3.6 0.661
2pd8 FADVivid PAS protein VVD / 0.659
1xdi FADNAD(P)H dehydrogenase (quinone) / 0.655
3vaq ADNPutative adenosine kinase / 0.650