Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3tb9 CDP Ribonucleoside-diphosphate reductase large chain 1 1.17.4.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3tb9 CDPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 1.026
3s87 ADPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.996
3k8t 2A5Ribonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.912
1xje GDPVitamin B12-dependent ribonucleotide reductase / 0.857
2cvu CDPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.847
2cvw GDPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.813
5cns CDPRibonucleoside-diphosphate reductase 1 subunit alpha 1.17.4.1 0.793
1xjn CDPVitamin B12-dependent ribonucleotide reductase / 0.786
1xjk ADPVitamin B12-dependent ribonucleotide reductase / 0.731
2eud GCQRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.674
3o0o GDPVitamin B12-dependent ribonucleotide reductase / 0.657
5c3z ACPRibokinase / 0.652