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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3sug SUE Polyprotein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3sug SUEPolyprotein / 1.244
4i31 1BVGenome polyprotein 2.7.7.48 0.884
3sud SUEPolyprotein / 0.874
3suf SUEPolyprotein / 0.843
4ktc 1X3Genome polyprotein 3.4.21.98 0.839
2k1q GLU_LEU_IBU_OBF_FE3Polyprotein / 0.693
2gtb AZPOrf1ab polyprotein / 0.651