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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3sao DBH Extracellular fatty acid-binding protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
3sao DBHExtracellular fatty acid-binding protein / 0.849
1kw8 BPYBiphenyl-2,3-diol 1,2-dioxygenase 1.13.11.39 0.670
1kw6 BPYBiphenyl-2,3-diol 1,2-dioxygenase 1.13.11.39 0.656
3cmp DBHNeutrophil gelatinase-associated lipocalin / 0.655