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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3r8v Z62 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3r8v Z62Cyclin-dependent kinase 2 2.7.11.22 0.936
3r8u Z31Cyclin-dependent kinase 2 2.7.11.22 0.849
3rpr 25ZCyclin-dependent kinase 2 2.7.11.22 0.812
3s0o 50ZCyclin-dependent kinase 2 2.7.11.22 0.781
3rah O1ZCyclin-dependent kinase 2 2.7.11.22 0.777
3s00 Z60Cyclin-dependent kinase 2 2.7.11.22 0.730
3qtq X35Cyclin-dependent kinase 2 2.7.11.22 0.704
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.702
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.701
3rkb 12ZCyclin-dependent kinase 2 2.7.11.22 0.698
3r9n Z68Cyclin-dependent kinase 2 2.7.11.22 0.697
3s1h 56ZCyclin-dependent kinase 2 2.7.11.22 0.691
3qts X46Cyclin-dependent kinase 2 2.7.11.22 0.689
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.670
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.669
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.666
3rk5 07ZCyclin-dependent kinase 2 2.7.11.22 0.665
2iw6 QQ2Cyclin-dependent kinase 2 2.7.11.22 0.663
2izr BRKCasein kinase I isoform gamma-3 2.7.11.1 0.658
2w1h L0FCyclin-dependent kinase 2 2.7.11.22 0.657
3qtw X3ACyclin-dependent kinase 2 2.7.11.22 0.657
3rak 03ZCyclin-dependent kinase 2 2.7.11.22 0.657
3qtr X36Cyclin-dependent kinase 2 2.7.11.22 0.655
3sqq 99ZCyclin-dependent kinase 2 2.7.11.22 0.655
3ral 04ZCyclin-dependent kinase 2 2.7.11.22 0.654
3tiz 3TICyclin-dependent kinase 2 2.7.11.22 0.652
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.651
1w8c N69Cyclin-dependent kinase 2 2.7.11.22 0.650