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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3r0t FU9 Casein kinase II subunit alpha 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3r0t FU9Casein kinase II subunit alpha 2.7.11.1 1.138
3pe2 E1BCasein kinase II subunit alpha 2.7.11.1 0.982
3pe1 3NGCasein kinase II subunit alpha 2.7.11.1 0.969
3nga 3NGCasein kinase II subunit alpha 2.7.11.1 0.910
3axw TIDCasein kinase II subunit alpha 2.7.11.1 0.811
3bqr 4RBDeath-associated protein kinase 3 / 0.779
2xiz XIZSerine/threonine-protein kinase pim-1 2.7.11.1 0.711
4grb 0XGCasein kinase II subunit alpha 2.7.11.1 0.697
3mb6 01ICasein kinase II subunit alpha 2.7.11.1 0.682
3bgz VX3Serine/threonine-protein kinase pim-1 2.7.11.1 0.662
3owk 18ECasein kinase II subunit alpha 2.7.11.1 0.658