Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qh2 3NM Thiazole tautomerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qh2 3NMThiazole tautomerase / 0.885
2tps TPSThiamine-phosphate synthase / 0.781
1g69 TZPThiamine-phosphate synthase / 0.767
1g6c TZPThiamine-phosphate synthase / 0.767
1g67 TZPThiamine-phosphate synthase / 0.755
3o15 3NMThiamine-phosphate synthase / 0.748
1g4s TPSThiamine-phosphate synthase / 0.691
1g4t FTPThiamine-phosphate synthase / 0.670