sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3qbd | NAD | 3-dehydroquinate synthase | 4.2.3.4 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3qbd | NAD | 3-dehydroquinate synthase | 4.2.3.4 | 1.153 | |
| 3okf | NAD | 3-dehydroquinate synthase | 4.2.3.4 | 0.867 | |
| 3zok | NAD | 3-dehydroquinate synthase, chloroplastic | 4.2.3.4 | 0.830 | |
| 5hvn | NAD | 3-dehydroquinate synthase | / | 0.801 | |
| 1sg6 | NAD | Pentafunctional AROM polypeptide | / | 0.793 | |
| 4p53 | NAI | 2-epi-5-epi-valiolone synthase | / | 0.774 | |
| 1xag | NAD | 3-dehydroquinate synthase | / | 0.772 | |
| 1xaj | NAD | 3-dehydroquinate synthase | / | 0.759 | |
| 3clh | NAD | 3-dehydroquinate synthase | 4.2.3.4 | 0.751 | |
| 1nve | NAD | Pentafunctional AROM polypeptide | / | 0.738 | |
| 1nr5 | NAD | Pentafunctional AROM polypeptide | / | 0.725 | |
| 1xah | NAD | 3-dehydroquinate synthase | / | 0.713 | |
| 1nvb | NAD | Pentafunctional AROM polypeptide | / | 0.702 | |
| 5br4 | NAD | Lactaldehyde reductase | 1.1.1.77 | 0.698 | |
| 3rf7 | NAD | Iron-containing alcohol dehydrogenase | / | 0.689 | |
| 1xal | NAD | 3-dehydroquinate synthase | / | 0.684 | |
| 1jq5 | NAD | Glycerol dehydrogenase | 1.1.1.6 | 0.683 | |
| 3hl0 | NAD | Maleylacetate reductase | / | 0.658 | |
| 1nvf | ADP | Pentafunctional AROM polypeptide | / | 0.653 |